miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|171307021|gb|FE931835.1|FE931835 GTACAAAAAAGTTGGCCAAGGATGACGTGGCAATGAACGACCATCTCAAGGACGTGATCGACGTGAAGGAGGATCCGCTG
GCGGCATTCATCATGAAGAAGCGACAGAAGGTGGATATTCAGAAGGGAAGGAAAGTGTATCCGCGGTACGAGGGGGCGTG
GCCGCCGAATCGATTCGGTATCGCGCCGGGCTTCCGATGGGACGGAGTCGTGAGGGGAACGGGATTCGAGGGGCAGCTGG
CCATATCAGGAAATGCGAAGAGGGCCGCCGAACAGGAATACTATCAGAATATTCAATTGTACGAGTAGGGCAATCAATAA
GTTGTCGATTTCACTCATTATCTCATCTTTTTGCCCAGTTGAACTGTATGAGTAGAGCAGGTGAATCGGTTAAGTGTAGA
GATCAATATTTACAACAAAAATATCTCCATTTCACTCACTTTGTTCAATTGTATGAGCAGGAGTGTCAACTTCTATATAT
ACTTCGTCTATACTTCTATAGTTAACTTCTATAAGTTATCCATTTCACTCACTCATTATCTCATTGTTCTGTTAAGTTGT
ATGAGTAGGAGGATCGATTTCATGAGTAGATGAGGAGGGTTGATCAATAATTTAAAAAATCTCTCCATTTCACTCATTAT
CTCATCGT




Most similar to sp|P30640|BUD13_CAEEL

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P30640|BUD13_CAEEL BUD13 homolog OS=Caenorhabditis elegans
           GN=R08D7.1 PE=2 SV=1
          Length = 458

 Score =  109 bits (273), Expect = 1e-23
 Identities = 54/97 (55%), Positives = 67/97 (69%)
 Frame = +3

Query: 15  AKDDVAMNDHLKDVIDVKEDPLAAFIMKKRQKVDIQKGRKVYPRYEGAWPPNRFGIAPGF 194
           A+DD AMN HLK+V+    DP+A  I KKR+   I +G  VYP Y G + PNRFGIAPG+
Sbjct: 363 ARDDDAMNAHLKEVLHAA-DPMANMIQKKRRDTAIDRGELVYPSYHGHFVPNRFGIAPGY 421

Query: 195 RWDGVVRGTGFEGQLAISGNAKRAAEQEYYQNIQLYE 305
           RWDGV R  GFEG+LA + N K A + EYY++I  YE
Sbjct: 422 RWDGVDRSNGFEGKLAKTENTKTANQSEYYKSIAEYE 458